Publications

2025

Khan, A. S., S. M. Zumkeller, G. Schmitz, I. Calic, T. Ali, N. Rahnamae, L. Hoerdemann, L. Abdelwahed, J. J. Szymanski, and J. de Meaux. (2025) The complex molecular basis of enhanced stress resilience in extreme drought-tolerant Arabis grassland species. https://doi.org/10.1101/2025.10.02.680103

Rahnamae, N., L. Metzger, L. Hördemann, K. Korfmann, A. K. Khan, C. I. Dent, S. Amar, R. Y. Wijfjes, T. Ali, G. Schmitz, B. Stich, A. Tellier, and J. de Meaux. (2025) Contemporary hybridization among Arabis floodplain species creates opportunities for adaptation . New Phytologist, https://doi.org/10.1111/nph.70779

Tran, N. L. T., T. Ali, G. Schmitz, and J. de Meaux. (2025) Heat-Induced Secondary Dormancy Contributes to Local Adaptation in Arabidopsis thaliana. Molecular Ecology, e70086. https://doi.org/10.1111/mec.70086

2023

Schmey, T., Small, C., Hoyoz, L. M., Ali, T., Gamboa, S., Mamami, B., Sepulveda, G. C., Thines, M., Stam, R. (2023) Small-spored Alternaria spp. (section Alternaria) are common pathogens on wild tomato species. Environmental Microbiology, 25(10), 1830–1846. https://doi.org/10.1111/1462-2920.16394

2022

Kitner, M., Thines, M., Sedlářová, M., Vaculná, L., Bán, R., Körösi, K., Iwebor, M., Antonova, T., Ali, T., Nádvorník, P., Lebeda, A., Spring, O. (2022) Genetic structure of Plasmopara halstedii populations across Europe and South Russia. Plant Pathology, 72, 361–375. https://doi.org/10.1111/ppa.13666

2021

Vaculná, L., Majeský, Ľ., Ali, T., Seregin, P. A., Prausová, R., Kapler, A., Iakushenko, D., Thines, M., Kitner, M. (2021) Phylogeography and population genetic diversity of endangered species Adenophora liliifolia (Campanulaceae). Conservation Genetics. https://doi.org/10.1007/s10592-021-01396-5

2020

Ali, T. (2020) A conceptual framework and toolkit for phylogeography and landscape genomics. Critical Reviews in Plant Sciences. https://doi.org/10.1080/07352689.2020.1830232

Thines, M., Buaya, A., Ali, T., Brand, T. (2020) Peronospora aquilegiicola made its way to Germany: the start of a new pandemic? Mycological Progress, 19, 791-798. https://doi.org/10.1007/s11557-020-01596-2

2019

Ali, T., Muñoz-Fuentes, V., Çelik, A., Schmuker, A., Buch, A., Dutbayev, A., Runge, F., Khaliq, I., Solovyeva, I., Gabrielyan, I., Maciá-Vicente, J. G., Glynou, K., Nigrelli, L., Vakhrusheva, L., Kitner, M., Ploch, S., Xia, X., Nowak, C., Thines, M. (2019) Out of Transcaucasia: Origin of Western and Central Palearctic populations of Microthlaspi perfoliatum. Flora, 253, 127-141. https://doi.org/10.1016/j.flora.2019.02.012

2018

Brandrud, T. E., Schmidt-Stohn, G., Liimatainen, K., Niskanen, T., Frøslev, T. G., Soop, K., Bojantchev, D., Kytövuori, I., Jeppesen, T. S., Bellù, F., Saar, G., Oertel, B., Ali, T., Thines, M., Dima, B. (2018) Cortinarius sect. Riederi: taxonomy and phylogeny of the new section with European and North American distribution. Mycological Progress, 17, 1323-1354. https://doi.org/10.1007/s11557-018-1443-0

Bandini, D., Oertel, B., Ploch, S., Ali, T., Vauras, J., Schneider, A., Scholler, M., Eberhardt, U., Thines, M. (2018) Revision of some central European species of Inocybe (Fr.: Fr.) Fr. subgenus Inocybe, with the description of five new species. Mycological Progress, 1-48. https://doi.org/10.1007/s11557-018-1439-9

2017

Ali, T., Muñoz-Fuentes, V., Çelik, A., Schmuker, A., Buch, A., Dutbayev, A., Runge, F., Khaliq, I., Solovyeva, I., Gabrielyan, I., Maciá-Vicente, J. G., Glynou, K., Nigrelli, L., Vakhrusheva, L., Kitner, M., Ploch, S., Xia, X., Nowak, C., Thines, M. (2017) Genetic patterns reflecting Pleistocene range dynamics in the annual calcicole plant Microthlaspi erraticum across its Eurasian range. Flora, 236-237, 132-142. https://doi.org/10.1016/j.flora.2017.09.014

Glynou, K., Ali, T., Haghi Kia, S., Thines, M., Maciá-Vicente, J. G. (2017) Intraspecific genetic diversity in root-endophytic fungi reflects efficient dispersal and environmental adaptation. Molecular Ecology. https://doi.org/10.1111/mec.14231

2016

Ali, T., Runge, F., Ayan, D., Schmuker, A., Solovyeva, I., Nigrelli, L., Buch, A., Xia, X., Ploch, S., Orren, O., Kummer, V., Ҫelik, A., Vakhrusheva, L., Gabrielyan, I., Thines, M. (2016b) Range-wide complete taxon sampling of Microthlaspi reveals that Microthlaspi erraticum is widespread and ranges from the Alps to the Tien Shan. Flora, 225, 76-81. https://doi.org/10.1016/j.flora.2016.09.008

Ali, T., Schmuker, A., Runge, F., Solovyeva, I., Nigrelli, L., J, P., Buch, A., Xia, X., Ploch, S., Orren, O., Kummer, V., Linde-Laursen, I., Ørgaard, M., Hauser, T. P., Ҫelik, A., Thines, M. (2016a) Morphology, phylogeny, and taxonomy of Microthlaspi (Brassicaceae, Coluteocarpeae) and related genera. Taxon, 65(1), 79-98. https://doi.org/10.12705/651.6

Glynou, K., Ali, T., Buch, A., Haghi Kia, S., Ploch, S., Xia, X., Çelik, A., Thines, M., Maciá-Vicente, J. G. (2016) The local environment determines the assembly of root endophytic fungi at a continental scale. Environmental Microbiology. https://doi.org/10.1111/1462-2920.13112

2015

Cheikh-Ali, Z., Glynou, K., Ali, T., Ploch, S., Kaiser, M., Thines, M., Bode, H. B., Maciá-Vicente, J. G. (2015) Diversity of exophillic acid derivatives in strains of an endophytic Exophiala sp. Phytochemistry, 118, 83–93. https://doi.org/10.1016/j.phytochem.2015.08.006

Kitner, M., Lebeda, A., Sharma, R., Runge, F., Dvorák, P., Ali, T., Choi, Y.-J., Sedláková, B., Thines, M. (2015) Coincidence of virulence shifts and population genetic changes of Pseudoperonospora cubensis in the Czech Republic. Plant Pathology, 64, 1461–1470. https://doi.org/10.1111/ppa.12370

2014

Schneider, J. V., Bissiengou, P., Amaral Mdo, C., Ali, T., Fay, M. F., Thines, M., Sosef, M. S., Zizka, G., Chatrou, L. W. (2014) Phylogenetics, ancestral state reconstruction, and a new infrafamilial classification of the pantropical Ochnaceae (Medusagynaceae, Ochnaceae s.str., Quiinaceae) based on five DNA regions. Molecular Phylogenetics and Evolution, 78, 199–214. https://doi.org/10.1016/j.ympev.2014.05.018